rs219683555 SNP Detail

Summary

• ID
  rs219683555
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:70092057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTTTTAT GGCCCTGGAC
  TCCCTCAAAC AGGCAAATAA GCGGCATGTA CCTGCAGGAG CTCAGATAGC TGAACTGTGG
  GAGTAGTTAC ACATCCCCCT ACTGCTACTG CAGCAAGGGC TGCAGCTACC ACCAGGGAAA
  GTTCAGGTTA GTAACGTGCC TGGGTCAGGT ACCTTAAAGA AGGGGTGCAG CCTACTACCA
  G
  GGAGGAGAGG GGGAGAGGGA GGGAGGGAGG GACAGAGAGG GGGGGGGAGG GACAGGGAGA
  GGGAGAGGGA GAGGGAGAGG GAGAGGGAGA GGGAGAGGGA GAGGGAGAGG GAGAGGGAGA
  GGGAGAGGGA GAGGGAGAGG GAGAGGGAGA GGGAGAGGGA GAGGGAGAGA GAGAGAGACT
  CCAGCCTGAG CAGGTAAAGA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RF/J	SJL/J	SM/J	SWR/J	WSB/EiJ
ss403736563	MGP_WTSI_X_68301626	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RF/J	SJL/J	SM/J	SWR/J	WSB/EiJ
rs219683555					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403736563	MGP_WTSI_X_68301626	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:70092057 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22753	CpG island 22753	1297 bp proximal
Gm61915	predicted gene, 61915	within coordinates
Gm61918	predicted gene, 61918	147 bp upstream
Mamld1	mastermind-like domain containing 1	1789 bp upstream
Rr691735	regulatory region 691735	935 bp proximal
Rr691736	regulatory region 691736	1513 bp proximal
Rr691737	regulatory region 691737	1631 bp proximal
Tssr161155	transcription start site region 161155	1614 bp upstream
Tssr161156	transcription start site region 161156	1675 bp upstream
Tssr161157	transcription start site region 161157	1709 bp upstream