rs219685187 SNP Detail

Summary

• ID
  rs219685187
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60961592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAACAAA CAAAAAGACA
  GTACTGATTT GAGATCTGTT CTTCTTGGGT ATCTATTATT AAGAACTCAA AATCTCACAA
  ATAGAGCAGG TAATTAACAA GTCTTTCTTG AAACTGCTAT GGGTTAAATG CTTACATTCC
  CCCACAAAAT TTCTGCTGGT TTTAAACCCT GGAACCAGTT TTATCAGGAG GTAAGAACCC
  Y
  CAGAGGTTAT AAAGTCATAG AGGAGCCTCC ATCATGAGTA CAATTGATCC CCTTACAAAA
  AAAAGACAGA CCTCAGAGAA TGAGCCTGCT CCTTCTTCGT TCGTCTTCCT CTCCTCCCCC
  CCCCCCCCCC CCCCCCCCCC GAGAGACAGG GTTTCTCTGT GCAGCCCTGG CTGTCCTGGA
  ACTCACTCTG TAAACCAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323327725	CHEV_10_60588561	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219685187					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60961592 () rs orientation: forward

Symbol	Name	Function Class
Gm55864	predicted gene, 55864	578 bp upstream
Rr219927	regulatory region 219927	1809 bp proximal
Sgpl1	sphingosine phosphate lyase 1	within coordinates