rs219690319 SNP Detail

Summary

• ID
  rs219690319
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24242673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATTTCGC CAATGAGAGA
  ATGTCAAGAA CACAGTGATA TTGTACACTA TTTTTCCTCT GGATTTGAAC TTATTTAAAA
  TGAACTCAAG ATTTATAGCC AAGCTACAGT GAAAAGTTTG GTAAATGTCC TATGGAACAT
  ACTTCCCATA TATTTCCAAG GGTATTGGTT TATAGCAAAA CATGAGCAGC TTGGTGCACA
  Y
  GGATGCAGTT TCTTTTGTTC CCAGAAAAGT CCTTTATTGA ATCTCCGAAA CTTAGGATTT
  CCATATCAAG TAACCACTCA TGGGGCATCG GCTCCTTTAG CTCTTTGGGT GAGGCCACAA
  AGCACATAAT GAAGAGCTTT GTTACAGCCA CCAAAGGGAA TCTTTAAAGG CTGAGCATGG
  TGGCCAGACA AGAGCCTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324294189	CHEV_13_24150559	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219690319					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24242673 () rs orientation: forward

Symbol	Name	Function Class
4933427I18Rik	RIKEN cDNA 4933427I18 gene	735 bp upstream
Carmil1	capping protein regulator and myosin 1 linker 1	within coordinates
D13Ertd224e	DNA segment, Chr 13, ERATO Doi 224, expressed	580 bp distal
Tssr121764	transcription start site region 121764	599 bp downstream
Tssr121765	transcription start site region 121765	630 bp downstream