rs219699285 SNP Detail

Summary

• ID
  rs219699285
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:110191936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCCCTCT GGAAATATAA
  GTTTTCAATA AACAAAAGGA AGCAATGCTA TCTGAGTCCA AGAAGAAAAA AACATGCTGA
  CAACTTAAAT CATAGACACT TGAGTGTTAA GCAATCTGTT TCTTTGATGG TGAAGTGAAA
  GACACATCAT GAGTGGGCAA CCACCCTAAA GTTTTGCTAT CTTAAATGTT GCATCTTCAA
  Y
  TTACACAAAC CCACAATGGA ACTTTGAACA TCTTACTGGT GGTGATTTGC ATGCAAATTC
  TCAATAACAC TCTTACAACA AAACAGAAAC AACTAAGAAC ATGGTAAATA AATAAGAGCG
  AAAGGAGAAT CAATGAACTT CCTTGTCTGG CAGGCATGCC ACACACCTGG GACCTCATCT
  GAAAATCAGG CATCTCAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355239491	MGP_WTSI_2_110201748	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219699285					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355239491	MGP_WTSI_2_110201748	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:110191936 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12041	CpG island 12041	1022 bp proximal
Fibin	fin bud initiation factor homolog (zebrafish)	within coordinates
Gm30319	predicted gene, 30319	within coordinates
Rr55365	regulatory region 55365	within coordinates
Tssr25605	transcription start site region 25605	1313 bp downstream
Tssr25606	transcription start site region 25606	1364 bp downstream
Tssr25607	transcription start site region 25607	1394 bp downstream
Tssr25608	transcription start site region 25608	1501 bp downstream
Tssr25609	transcription start site region 25609	1524 bp downstream
Tssr25610	transcription start site region 25610	1544 bp downstream
Tssr25611	transcription start site region 25611	1566 bp downstream