rs219702425 SNP Detail

Summary

• ID
  rs219702425
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134652827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAAAGCCA ACGCAGCAAA
  AGCTCTGGGA ACAGCCAACT TCGACTTGCC AGCAAGTCTC CGAGCCAAGG AGGCAAGCCA
  GGGGACAGCT GTTTCCAGCA GTGGGCCAAA GGTGGAGGTA AGTGCCTTCA GGAAGCTGCT
  GCCAGCATTT ATTACCCTTT GCCAGTGAAC ACAACCCTCC TGGGGTTCTT TATATCATTT
  R
  TCCAGAACAA AACCTTAATC TGACAAGTAT CAGCCTGTCT CACAGGAAAC TGGGAGACGA
  TGGACTACTT TCGTGTCGAC ACTTGGACAC TTGGTTTGCT CTTTACACTA CAGTAAAAAC
  AGTACATTGT TGGTAATACT TTCTCTCCCT CTAGTCTCTA GAGACTGGAG TGTTGTCAGT
  AGTTTTCATG TACACCATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363351924	MGP_WTSI_4_134481431	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219702425					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363351924	MGP_WTSI_4_134481431	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134652827 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15053	CpG island 15053	852 bp distal
Rr398583	regulatory region 398583	1874 bp downstream
Rr601867	regulatory region 601867	1914 bp distal
Rr601868	regulatory region 601868	1145 bp distal
Rr601869	regulatory region 601869	196 bp proximal
Rsrp1	arginine/serine rich protein 1	within coordinates
Tssr39581	transcription start site region 39581	1923 bp downstream
Tssr39582	transcription start site region 39582	1888 bp downstream
Tssr39583	transcription start site region 39583	1517 bp downstream
Tssr39584	transcription start site region 39584	1451 bp downstream
Tssr39585	transcription start site region 39585	1417 bp downstream
Tssr39586	transcription start site region 39586	1295 bp downstream
Tssr39587	transcription start site region 39587	1227 bp downstream
Tssr39588	transcription start site region 39588	1141 bp downstream
Tssr39589	transcription start site region 39589	1116 bp downstream
Tssr39590	transcription start site region 39590	1089 bp downstream
Tssr39591	transcription start site region 39591	49 bp downstream
Tssr39592	transcription start site region 39592	552 bp upstream
Tssr39593	transcription start site region 39593	1074 bp upstream
Tssr39594	transcription start site region 39594	1159 bp upstream
Tssr39595	transcription start site region 39595	1186 bp upstream
Tssr43947	transcription start site region 43947	1852 bp downstream