rs219710943 SNP Detail

Summary

• ID
  rs219710943
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:131196435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTCGAAA AACCGGTGCG
  ACTTCTTCGG GGAGGCGATC CCAGCTGGCC GACCGACCCT CCCTCCCCTC TGCGGCCCTA
  CAAGATGCGG CGAAGGAGGG GCTTGGCAGG CAGCACGAGG TGGCTCCCGG CCGCAGGCTG
  AGCGCAGAGC CGGGCAGACC TCCCTGAACG CGGGCGGGGA TCAATCTGGG AAAGTTCTCT
  R
  GGTGCCGCTC CCAGCAACTT TCAGGGGTGG GGCAGGGAAG GGATAAGCCA CCTCCGCACC
  TCCTCGGGTT TCGGAAACTG CTTCCTAATA ACGACGTGTG CGGGCCAGGG GCACCCGCTG
  ACTCAAGGGG TGGTGCCCCG CCTAGGTCGA GGGGGTAGGT TTCCAAACAT CACAAGACCG
  CTTGGCGAGG TTAGTCACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359739309	MGP_WTSI_3_131153638	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219710943					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359739309	MGP_WTSI_3_131153638	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131196435 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13839	CpG island 13839			within coordinates
Gm36753	predicted gene, 36753			within coordinates
Rr585350	regulatory region 585350			1783 bp distal
Rr585351	regulatory region 585351			270 bp distal
Rr585352	regulatory region 585352			within coordinates
Rr585353	regulatory region 585353			within coordinates
Rr585354	regulatory region 585354			1875 bp proximal
Sgms2	sphingomyelin synthase 2			Intron
				Noncoding-Transcript-Variant
Tssr1055	transcription start site region 1055			945 bp downstream
Tssr1056	transcription start site region 1056			643 bp downstream
Tssr31735	transcription start site region 31735			921 bp downstream
Tssr31736	transcription start site region 31736			269 bp downstream
Tssr31737	transcription start site region 31737			885 bp upstream
Tssr35707	transcription start site region 35707			1653 bp upstream
Tssr35708	transcription start site region 35708			1624 bp upstream
Tssr35709	transcription start site region 35709			917 bp upstream
Tssr35710	transcription start site region 35710			900 bp upstream
Tssr35711	transcription start site region 35711			738 bp upstream
Tssr35712	transcription start site region 35712			708 bp upstream
Tssr35713	transcription start site region 35713			439 bp upstream
Tssr35714	transcription start site region 35714			179 bp upstream
Tssr35715	transcription start site region 35715			143 bp upstream
Tssr35716	transcription start site region 35716			8 bp upstream
Tssr35717	transcription start site region 35717			55 bp downstream
Tssr35718	transcription start site region 35718			73 bp downstream
Tssr35719	transcription start site region 35719			316 bp downstream
Tssr35720	transcription start site region 35720			379 bp downstream
Tssr35721	transcription start site region 35721			601 bp downstream
Tssr35722	transcription start site region 35722			653 bp downstream
Tssr35723	transcription start site region 35723			712 bp downstream
Tssr35724	transcription start site region 35724			725 bp downstream
Tssr35725	transcription start site region 35725			763 bp downstream