rs219712719 SNP Detail

Summary

• ID
  rs219712719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171287469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGTGCAG TTCTATCTAA
  TGAGGCGATC TGAGATCAAT TCTGGTCCTT GCCCCACCTC GAAGCCAGTT GTGTGATCTT
  GAACACCTGT CTTTACTTGT AGTCTGAGTT CCGCGTGTAA AATTAGGGTA ATAACTCTTG
  TCCTGCTGAT ATGTGGTGCT TGTTTCAAGG ATCAAACAGT GTTAACATCT CTGAAAACAC
  Y
  CCGAAGAGCG GCTAATGTTG TACAAATGTC AAGTTGCCTG TTCTATCCTC ATCCTACCTC
  CACCCCACCC CCACTTGCCT CCAGCTTGCT GGATCCCTTC CAAGATTGTT TTGACAAGTG
  GCTGCACTCT TTTGTGGAGC TTTCTCTGAA CCATGAAATG TCATTCTGGA AGCTCCCTTT
  GGACAAGTAG GGATTTAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320119045	CHEV_1_173390032	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219712719					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171287469 () rs orientation: forward

Symbol	Name	Function Class
F11r	F11 receptor	within coordinates
Rr25638	regulatory region 25638	1953 bp distal
Rr31965	regulatory region 31965	within coordinates
Tssr10057	transcription start site region 10057	1782 bp downstream
Tssr10058	transcription start site region 10058	1542 bp downstream