rs219718517 SNP Detail

Summary

• ID
  rs219718517
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89777490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAACTTTT TTGTTTTTGT
  TTTTCAAGAC AGGGTTTCTC TGTGTAGATC AGGCTGGCCT CAAATTCAGA GATCAGCCTT
  CCTCTGCCTC CCAAGTGTTA TAATTAAAGG CAAGTGCTGC TGCCACCACA ACCCACAGAA
  CTGGTTAATT TTTAATAAGC ATACATTGAT CAATTCTGGA GGCTAGGAGG TCCCCGAAAT
  M
  AAGAGCTTGG TTATTTTAGA GCACAAGGCA AAGAGAAAGA GAAAAGAGTA GGAACTTCAA
  ATACTTTTAT AGTTAGTATT AATCCGTGTA TGATTTAAAT GCTTCCCATT AGGCCACATC
  TTAACACTCT TGAGGATTAA AATTCAACAT ATTAATTGGT GGTATGGGGG TAGGGCATGG
  GTGGGCACAT TGTGGAGACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372271417	MGP_WTSI_7_97276792	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219718517					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372271417	MGP_WTSI_7_97276792	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89777490 () rs orientation: forward

Symbol	Name	Function Class
2310010J17Rik	RIKEN cDNA 2310010J17 gene	within coordinates
Cpgi19396	CpG island 19396	1426 bp proximal
Picalm	phosphatidylinositol binding clathrin assembly protein	1221 bp upstream
Rr168173	regulatory region 168173	510 bp proximal
Rr400433	regulatory region 400433	946 bp upstream
Tssr67692	transcription start site region 67692	1216 bp upstream
Tssr67693	transcription start site region 67693	1426 bp upstream
Tssr67694	transcription start site region 67694	1779 bp upstream
Tssr67695	transcription start site region 67695	1828 bp upstream
Tssr67696	transcription start site region 67696	1945 bp upstream
Tssr73520	transcription start site region 73520	1057 bp downstream
Tssr73521	transcription start site region 73521	1366 bp downstream
Tssr73522	transcription start site region 73522	1565 bp downstream
Tssr73523	transcription start site region 73523	1611 bp downstream
Tssr73524	transcription start site region 73524	1644 bp downstream
Tssr73525	transcription start site region 73525	1712 bp downstream
Tssr73526	transcription start site region 73526	1804 bp downstream
Tssr73527	transcription start site region 73527	1845 bp downstream