rs219721415 SNP Detail

Summary

• ID
  rs219721415
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47925405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTTCCCA TCACTACACT
  TTTTTTTTAA AAAAGGATTT ATTTATATTT TATTTTGTTT GTTTTTAGAC AGGGTCTCAC
  TATGTAGCTC TAGCTGTCCT GGAACTCACT CTGTAGATGG GAGTGGCCTC AGATTCACAG
  AGATCCATCT CCTAGTGCTG GAACTAAATG CACATCATTA CACCTGACTT TATTTTATTT
  Y
  TGGGGCTGGG TGCTGTGGAG GGAAGTCAGA AAGGAGCTGG AGTTACAGGC CCTTGTGGAC
  AACCCAGTGT GGATGGTGAA CTCTGTTCTG TCAGAAGTGA GTGGTCAGAA CCATTGAGCC
  ATCTCACCAG CCTCTTGTTA GACTTTTATT TCTTTTTTTT GTTCTTGTGT TTTTGAGACA
  GAGTTTCTAT GTGTATCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325406395	CHEV_17_47751429	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219721415					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47925405 () rs orientation: forward

Symbol	Name	Function Class
Gm20517	predicted gene 20517	within coordinates
Med20	mediator complex subunit 20	within coordinates
Rr331713	regulatory region 331713	5 bp distal
Rr337817	regulatory region 337817	418 bp proximal
Rr339937	regulatory region 339937	1204 bp distal
Rr341910	regulatory region 341910	796 bp proximal