rs219727772 SNP Detail

Summary

• ID
  rs219727772
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74700234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTAAGTATT TTGCTACTAA GTTCAAAttg
  ttttcaccag gctagttttt ctctgcatag ccctagctga tctgaactca ctctgcagac
  caggctgtcc tcatactcag agatccacct gcctcagcct accgaatggt ggggttaaag
  R
  agtgcacaac cggtgcccag GCCTCATCAG GTTAGTTATA TCGTTAATTA TCATAGCCTG
  TTTGAGAAAG CTCCTTTTGC CATCCAGCTG ACTTTATAGT TCTCTAAATT TAATAGATCC
  AGCGACATCT GAAACAGGGG GATCTATTCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319795107	CHEV_1_74707649	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219727772					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74700234 () rs orientation: forward

Symbol	Name	Function Class
Cpgi388	CpG island 388	364 bp proximal
Gm70804	predicted gene, 70804	within coordinates
Rr371526	regulatory region 371526	within coordinates
Rr413230	regulatory region 413230	within coordinates
Rr413231	regulatory region 413231	320 bp proximal
Rr413232	regulatory region 413232	681 bp proximal
Rr413233	regulatory region 413233	723 bp proximal
Tssr7442	transcription start site region 7442	475 bp upstream
Tssr7443	transcription start site region 7443	558 bp upstream
Tssr7444	transcription start site region 7444	623 bp upstream
Tssr7445	transcription start site region 7445	639 bp upstream
Tssr7446	transcription start site region 7446	719 bp upstream
Tssr7447	transcription start site region 7447	1021 bp upstream
Ttll4	tubulin tyrosine ligase-like family, member 4	570 bp upstream