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rs219734059 SNP Detail
Summary
  • ID
    rs219734059
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr19:44383772 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGCAGCCCCA GTGCCAACTG
CCGTCTATAA CATGTTTGAC AATGATAACG AGGACGACAA TACAATCGAA TACACTCGAA
TTACTTCCCA CCAAATTTGA TCACTTACTA AAAAAAAAAA AATTCCAAAA TGTAGCCTGT
AAAAGATTTC TGCAAACCAA TGTACTGATG ACTCTCCAGC CAGCCTCTTG ACTATTCCCA
Y
TCGATCTAAG GGGTCTCCGG GCTAAGGGAA GGAGTGAGAC TGAGCTCACA GGCACTACAG
ATTAGGAAAG AGATAAGGCA CCCAAAGCTA TTAGTACATT CATCTGGAAA CTGTTATAAA
TCCTTCTTTG AGAGGATCTG AAAGATGTCC TTTACTTAAA GACACCAGGA CCTCAATGTA
GCCTTGCTTT GGAACATGGC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss402552080 MGP_WTSI_19_44469823 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs219734059 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss402552080 MGP_WTSI_19_44469823 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:44383772 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D19Mit67 DNA segment, Chr 19, Massachusetts Institute of Technology 67 1822 bp proximal
D19Mit67.2 DNA segment, Chr 19, Massachusetts Institute of Technology 67.2 1672 bp proximal
D19Nds1 DNA segment, Chr 19, Nuffield Department of Surgery 1 1780 bp proximal
Rr548236 regulatory region 548236 865 bp distal
Rr548237 regulatory region 548237 within coordinates
Rr548238 regulatory region 548238 1536 bp proximal
Scd1 stearoyl-Coenzyme A desaturase 1 within coordinates
Tssr5524 transcription start site region 5524 1026 bp downstream
Tssr156606 transcription start site region 156606 1075 bp upstream
Tssr156607 transcription start site region 156607 1399 bp upstream
Tssr156608 transcription start site region 156608 1808 bp upstream
Tssr159446 transcription start site region 159446 740 bp upstream
Tssr159447 transcription start site region 159447 565 bp upstream
Tssr159448 transcription start site region 159448 539 bp upstream
Tssr159449 transcription start site region 159449 476 bp upstream
Tssr159450 transcription start site region 159450 462 bp upstream
Tssr159451 transcription start site region 159451 382 bp upstream
Tssr159452 transcription start site region 159452 88 bp upstream
Tssr159453 transcription start site region 159453 19 bp upstream
Tssr159454 transcription start site region 159454 within coordinates
Tssr159455 transcription start site region 159455 283 bp downstream
Tssr159456 transcription start site region 159456 405 bp downstream
Tssr159457 transcription start site region 159457 449 bp downstream
Tssr159458 transcription start site region 159458 479 bp downstream
Tssr159459 transcription start site region 159459 569 bp downstream
Tssr159460 transcription start site region 159460 606 bp downstream
Tssr159461 transcription start site region 159461 665 bp downstream
Tssr159462 transcription start site region 159462 693 bp downstream
Tssr159463 transcription start site region 159463 739 bp downstream
Tssr159464 transcription start site region 159464 762 bp downstream
Tssr159465 transcription start site region 159465 786 bp downstream
Tssr159466 transcription start site region 159466 807 bp downstream
Tssr159467 transcription start site region 159467 860 bp downstream
Tssr159468 transcription start site region 159468 1108 bp downstream
Tssr159469 transcription start site region 159469 1178 bp downstream
Tssr159470 transcription start site region 159470 1195 bp downstream
Tssr159471 transcription start site region 159471 1212 bp downstream
Tssr159472 transcription start site region 159472 1248 bp downstream
Tssr159473 transcription start site region 159473 1267 bp downstream
Tssr159474 transcription start site region 159474 1292 bp downstream
Tssr159475 transcription start site region 159475 1337 bp downstream
Tssr159476 transcription start site region 159476 1355 bp downstream
Tssr159477 transcription start site region 159477 1375 bp downstream
Tssr159478 transcription start site region 159478 1385 bp downstream
Tssr159479 transcription start site region 159479 1409 bp downstream
Tssr159480 transcription start site region 159480 1437 bp downstream
Tssr159481 transcription start site region 159481 1486 bp downstream
Tssr159482 transcription start site region 159482 1586 bp downstream
Tssr159483 transcription start site region 159483 1677 bp downstream
Tssr159484 transcription start site region 159484 1711 bp downstream
Tssr159485 transcription start site region 159485 1837 bp downstream
Tssr159486 transcription start site region 159486 1844 bp downstream
Tssr159487 transcription start site region 159487 1925 bp downstream
Tssr159488 transcription start site region 159488 1942 bp downstream
Tssr159489 transcription start site region 159489 1996 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory