rs219745515 SNP Detail

Summary

• ID
  rs219745515
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:81910363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAGTCAG AGACATCTAA
  CATACAAGTA CGCTTAACAG ATGCTATGTA TTGATAAGTT ATATATATGT ATGGGTGCCT
  ATGTATGAAA CAGGGGAACA GGCATTGGCT TCCTTAGAAC TGGAATTATA GATGGTTGTG
  AGGCACCTGA TGTGGATGCT GGGAATTGAA CTCAGGACCT CTGGAAGAGC AGTAAGTGCT
  Y
  TTAACCACTG CACCATCTCT CCAGCTGCCA GGTGTTAGTT ATCGTCATTA AAATTATATT
  ATCATTCAGC TAATAAGCTG GCTCTCTAGG TAAAGGTGCA TGCTGCCAAG CCTGACGGCC
  TGAGTTCTCC TCCTGGGACC CCTGTAGTGG AGGGAAAGGG CCAACTTCTC AAGCTGCCCT
  CTGCCCTCCC ACACCCGCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325033177	CHEV_15_81856592	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219745515					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:81910363 () rs orientation: forward

Symbol	Name	Function Class
Rr506380	regulatory region 506380	1872 bp distal
Rr506381	regulatory region 506381	1480 bp proximal
Tssr132336	transcription start site region 132336	1863 bp upstream
Tssr132337	transcription start site region 132337	1892 bp upstream
Tssr132338	transcription start site region 132338	1927 bp upstream
Tssr132339	transcription start site region 132339	1949 bp upstream
Tssr135523	transcription start site region 135523	1687 bp downstream
Xrcc6	X-ray repair complementing defective repair in Chinese hamster cells 6	within coordinates