rs219747054 SNP Detail

Summary

• ID
  rs219747054
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:63216401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cCAGGGATT TGGGCATCTT ATGCTAGGAC
  TATACATTGA ATTGAAACCC AGTTGCAGTG TAGCCAGACT TCTATACCTA GAGCATTTTC
  AAATCTGAGA ATCATTCTGG TCCACTACCC TCCTTCATAA ATCAAAGAAG CACGAGTTTT
  W
  AGGAATCAGT GAAGCCGTGG ATTTGATCCC TAGCATCACA TAAACTACAC ACTGGTTTGC
  TTGATAGTAG GGATTACATT ACgtgattac acctgtaatc ccagcactca ggaggtcgag
  gcaagattaa gcattcaagg ccctccttga                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323333501	CHEV_10_62843370	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219747054					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:63216401 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1649	CpG island 1649	869 bp proximal
Cpgi1650	CpG island 1650	1710 bp proximal
Dnajc12	DnaJ heat shock protein family (Hsp40) member C12	1821 bp upstream
Gm66647	predicted gene, 66647	1235 bp downstream
Rr224928	regulatory region 224928	799 bp proximal
Rr369009	regulatory region 369009	1447 bp upstream