rs219749851 SNP Detail

Summary

• ID
  rs219749851
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101900571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAACAAAA AAAATTTCTC
  CACCCAGAGG ATGTGAAGAT TACAGAATAG GTATCCGTGC TGTGGTACTG TATAGAAAGT
  CAAGTTAGGA CAATCAAACT CAGGCTGGTC AGTGACTGAC TAAACGAGTG TTCTCAGATT
  CCAGAAGCCT GTTCTCATCG CACAGGCAGT TTGTGGACCC CTTACTTCTT CTTTGGCCCT
  W
  AGGCAAATTC CTCCCAATGG GAAGAGAATA AATTGGAGGG GCTAGGGGAA ATTTGGGAGG
  GCAGAACTAG TGTTTGGTAT TTAATGGGAA GAGGTTTGTG AGTCCCAAAA ATAACAGGGT
  CCTTAAGTGA GGTTTGTAAA TCCCCAAAAT AACAGGATCA GATTCAAGTG ACTTCAATGA
  AGCTATTAAA AATACGTTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372554854	MGP_WTSI_7_109399878	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219749851					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372554854	MGP_WTSI_7_109399878	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101900571 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	380 bp distal
Rhog	ras homolog family member G	1246 bp upstream
Rr652562	regulatory region 652562	1287 bp distal
Rr652563	regulatory region 652563	751 bp distal
Rr652564	regulatory region 652564	422 bp distal
Tssr2354	transcription start site region 2354	1088 bp downstream
Tssr68328	transcription start site region 68328	1671 bp downstream
Tssr68329	transcription start site region 68329	1650 bp downstream
Tssr68330	transcription start site region 68330	1109 bp downstream
Tssr73939	transcription start site region 73939	1990 bp upstream
Tssr73940	transcription start site region 73940	1943 bp upstream
Tssr73941	transcription start site region 73941	1890 bp upstream
Tssr73942	transcription start site region 73942	1805 bp upstream
Tssr73943	transcription start site region 73943	1278 bp upstream
Tssr73944	transcription start site region 73944	1241 bp upstream
Tssr73945	transcription start site region 73945	1226 bp upstream
Tssr73946	transcription start site region 73946	1030 bp upstream
Tssr73947	transcription start site region 73947	885 bp upstream
Tssr73948	transcription start site region 73948	849 bp upstream
Tssr73949	transcription start site region 73949	816 bp upstream
Tssr73950	transcription start site region 73950	769 bp upstream