rs219754063 SNP Detail

Summary

• ID
  rs219754063
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:116899550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGGTCCC CTAGCCGAGA
  AACAGCCCTG ATCTTACAAA GAGATGCTGA CTTAGTGTGC GTTCCCCCTT CCCGTCCCGC
  GCGGAGAGCT CGGTCACCCG GTCCCACGCA GGCCTCATGC CCGGCCCGAG CCATGTGCGG
  AGGGGCCAGG AGGCGGCCGC TCGGAGCCTG CGACTCCGGT TAGACAAGAG GACCAGCGGG
  R
  CGGCAGGACA CAGCGGGGCG GAGCAGGGAG CCTAAGTCCT TGGCCGAAAG CTAGGCTCAC
  CATGGTTCCG ACGGATTCCG CGTAGAGGAG AGAACCCCTC ACAATCCGCG CCGGGAAGCC
  AGGCCGGGGA AAGAGAGAAA GGCGGAAGTG ACGACACGCT CCGCCGCGGG GGGCGGAGCC
  GGACGCACGG GTTTCCGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323494028	CHEV_10_116500701	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219754063					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116899550 () rs orientation: forward

Symbol	Name	Function Class
Cct2	chaperonin containing TCP1 subunit 2	within coordinates
Cpgi2223	CpG island 2223	within coordinates
Rr402250	regulatory region 402250	87 bp upstream
Rr439433	regulatory region 439433	108 bp proximal
Rr439434	regulatory region 439434	908 bp proximal
Rr439435	regulatory region 439435	1106 bp proximal
Rr439436	regulatory region 439436	1479 bp proximal
Tssr99381	transcription start site region 99381	587 bp upstream
Tssr99382	transcription start site region 99382	279 bp upstream
Tssr99383	transcription start site region 99383	96 bp downstream
Tssr99384	transcription start site region 99384	119 bp downstream