rs219759672 SNP Detail

Summary

• ID
  rs219759672
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:8797807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGAGGC GGCGGGAGGC
  GGAGGAGGCG ACGGCGGCGA TGGAGGTGAA GCGGCTGAAA GTGACCGAGC TGCGGTCGGA
  GCTTCAGCGG CGGGGCCTGG ATTCGCGCGG CCTCAAAATG GATCTGGCGC AGCGTCTTCA
  GGAGGCACTG GATGCTGAGA TGCTGGAGGA CGAGGCCGGC GTTGGTGGGG CCGGGCCCGG
  Y
  GGGGCCTGCA AGGCGGAGCC TCGGCCTGTG GCCGCGTCGG GCGGAGGCCC GGGCGGGGAC
  GAGGAGGAGG AGGACGACGA CGAGGAGGAG GACGAGGAGG CGCTGCTTGA GGACGAAGAC
  GAGGAACCAC CACCTGCTCA GGCTTTGGGC CAGGCCGCGC AGCCGCCTCC GGAGCCCCCG
  GAGACGTCAG CCATGGAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401708504	MGP_WTSI_19_8894933	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219759672					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401708504	MGP_WTSI_19_8894933	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:8797807 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10577	CpG island 10577	within coordinates
Hnrnpul2	heterogeneous nuclear ribonucleoprotein U-like 2	within coordinates
Rr363768	regulatory region 363768	within coordinates
Rr370451	regulatory region 370451	within coordinates
Tssr154829	transcription start site region 154829	869 bp downstream
Tssr154830	transcription start site region 154830	835 bp downstream
Tssr154831	transcription start site region 154831	409 bp downstream
Tssr154832	transcription start site region 154832	383 bp downstream
Tssr154833	transcription start site region 154833	367 bp downstream
Tssr154834	transcription start site region 154834	304 bp downstream
Tssr154835	transcription start site region 154835	194 bp downstream
Tssr154836	transcription start site region 154836	129 bp downstream
Tssr154837	transcription start site region 154837	227 bp upstream
Tssr154838	transcription start site region 154838	250 bp upstream
Tssr158063	transcription start site region 158063	1731 bp upstream
Tssr158064	transcription start site region 158064	1435 bp upstream
Tssr158065	transcription start site region 158065	1252 bp upstream
Tssr158066	transcription start site region 158066	1192 bp upstream
Tssr158067	transcription start site region 158067	1142 bp upstream
Tssr158068	transcription start site region 158068	1093 bp upstream
Tssr158069	transcription start site region 158069	653 bp upstream
Tssr158070	transcription start site region 158070	867 bp downstream
Ttc9c	tetratricopeptide repeat domain 9C	1110 bp upstream