rs219769407 SNP Detail

Summary

• ID
  rs219769407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:14929361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCTTACT TTGCACTAAA
  AATATTGTTT TCTTTGTAGT TCCATTTTTC TTCCAGGTAA CTGAAACAAC CGAAGCATTG
  CCTTCCCAGG AACACTTTTG CCTAAGGCCT GAGTGTCAGC TGTCTTTCTA CTGTACTCCT
  GAATGTTCTA TTCTAGTACT TACCCAGTAC TTGCCTATCC AGTACTTACC CAGTACTTGC
  Y
  TATCCAGTAC TTACCCAGTC CTTACTTATC CAGTACTTAC CCAGTACTTA CTTATCCAGT
  ACTTACCCAG TACTTGCCTA TCCAGTACTT ACCCAGTACT TACTTATCCA GTACTTACCC
  AGACCACAAA ACTGACTTTG TGTCCCTTTG TATTAAGTTC TGTGAGGGCT GTCTGTACCC
  TGCCATCACC CCATGTCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360674715	MGP_WTSI_4_14856508	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219769407					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360674715	MGP_WTSI_4_14856508	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:14929361 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14053	CpG island 14053	476 bp proximal
Gm11837	predicted gene 11837	547 bp upstream
Gm68732	predicted gene, 68732	366 bp downstream
Rr589248	regulatory region 589248	within coordinates
Rr589249	regulatory region 589249	501 bp proximal
Rr589250	regulatory region 589250	1089 bp proximal
Rr589251	regulatory region 589251	1326 bp proximal
Tssr36545	transcription start site region 36545	499 bp upstream
Tssr36546	transcription start site region 36546	1258 bp upstream
Tssr36547	transcription start site region 36547	1348 bp upstream