TTGATGCCAC TGTCTCTAGG CAGAACTTAC ATTGTGGAGG GGATTCCGCA GACCAGACCA CTGGGAGGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TACCTCATAT ATATATGAGG GAGGAAACCC CGTGGGCAGA ATCAGGAAAA AAAAAACCAT AAGGAATAAG TAGGGTGTAA GTAGCTTCAA R AGGGATGAGA CTTGGCTGGA GTTTGATGGT TTCTGCCTAT AATCCCAGAC TGGAGATAGG CAGGAGGATT ACACATCTGA GGAAGAAAGA AAAGTGAGTA AGAGGACTCT TAAGACTGAT GCGGTGACCA TTCCTCATAG CCAGTGTACC TCAAACCCCC AGAACAGTTT GCAAACAGTT CATCGTGGCA GGTTTTAAAT R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss352216976 | MGP_WTSI_1_166390104 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | G | A | A | G | G | G | A | G | G | A | A | A | A | A | G | A | A | A | A | A | A | G | A | A | A | A | A | A | A | G | A | A | A | A |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs219770055 | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | G | A | A | G | G | G | A | G | G | A | A | A | A | A | G | A | A | A | A | A | A | G | A | A | A | A | A | A | A | G | A | A | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss352216976 | MGP_WTSI_1_166390104 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/G |
Location: Chr1:164287542 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Atp1b1 | ATPase, Na+/K+ transporting, beta 1 polypeptide | 1618 bp upstream | ||||||
Cpgi945 | CpG island 945 | 897 bp distal | ||||||
Gm32391 | predicted gene, 32391 | within coordinates | ||||||
Gm70485 | predicted gene, 70485 | within coordinates | ||||||
Gm70492 | predicted gene, 70492 | 1227 bp upstream | ||||||
Rr422212 | regulatory region 422212 | 1863 bp distal | ||||||
Rr422213 | regulatory region 422213 | 1629 bp distal | ||||||
Rr422214 | regulatory region 422214 | 1713 bp distal | ||||||
Rr422215 | regulatory region 422215 | 1458 bp distal | ||||||
Rr422216 | regulatory region 422216 | 1549 bp distal | ||||||
Rr422217 | regulatory region 422217 | 1238 bp distal | ||||||
Rr422218 | regulatory region 422218 | 737 bp distal | ||||||
Rr422219 | regulatory region 422219 | 446 bp proximal | ||||||
Rr422220 | regulatory region 422220 | 1912 bp proximal | ||||||
Tssr9788 | transcription start site region 9788 | 1443 bp downstream | ||||||
Tssr9789 | transcription start site region 9789 | 1426 bp downstream | ||||||
Tssr14746 | transcription start site region 14746 | 1961 bp upstream | ||||||
Tssr14747 | transcription start site region 14747 | 1610 bp upstream | ||||||
Tssr14748 | transcription start site region 14748 | 1236 bp upstream | ||||||
Tssr14749 | transcription start site region 14749 | 866 bp downstream | ||||||
Tssr14750 | transcription start site region 14750 | 881 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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