rs219773397 SNP Detail

Summary

• ID
  rs219773397
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77957571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACCAATAA AAGTTATCTC
  ACCTCCAATG CCTAAAGCAT TACTATTATA CTCATGAAAT CAGCCAGAAA GATCCCAACA
  GACTGGTGGC AGACTGAAGG GAATTCGGGG GTGGGTAAGA GAAGCATTAG CAGGTAAGGT
  CAGCTACTCC ACAGGTGGTT CTATCCACAT TTCCTAGGCA GGGTCCTTGT CCAGGGAGGA
  R
  GCAACAAATG GAAAAAGGAC ACAGAGACTT CTACTTGCAC GGAGGCGGAG ACAAAGACCA
  CAGACCCAAT CCAGCATCGG TTGTCTGTGA TGCTTGACTG TACAGTTTTA TTTCTCATGT
  TAGAATCGTT CCTAGCTGAG TGTGGTGGGC ATGCCTGGGG AGAAGGAGTA GGAGTGACAG
  AAAGACTATG CGCATCAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323015294	CHEV_9_77898096	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219773397					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77957571 () rs orientation: forward

Symbol	Name	Function Class
Gcm1	glial cells missing homolog 1	1669 bp upstream
Tssr86256	transcription start site region 86256	1649 bp upstream