rs219779320 SNP Detail

Summary

• ID
  rs219779320
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3124709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATACTGGCTG CTCTTGCAGA GGACCCAGGA ATTCTCAATG
  AAAGATCCTG ATAGAATGTA AAAGGTCACA GAAGCCCTGA AATTGGCAAA ATAGATTTCA
  Y
  TGTTAGTAGA AGTTGCTTCA CTGATTTAGA AAAATAGAGG TGCACAATGC TCTGGCCACT
  CCTAGAACCC GTGAGTCTGT CAATGTTTTG ACCATTCCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323546777	CHEV_11_3074712	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219779320					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3124709 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2458	CpG island 2458	903 bp distal
Cpgi2461	CpG island 2461	1907 bp proximal
Rr441484	regulatory region 441484	1759 bp distal
Rr441485	regulatory region 441485	885 bp distal
Rr441486	regulatory region 441486	within coordinates
Rr441487	regulatory region 441487	469 bp proximal
Rr441488	regulatory region 441488	900 bp proximal
Rr441489	regulatory region 441489	970 bp proximal
Sfi1	Sfi1 homolog, spindle assembly associated (yeast)	within coordinates
Tssr106448	transcription start site region 106448	1912 bp upstream
Tssr106449	transcription start site region 106449	1380 bp upstream