rs219792465 SNP Detail

Summary

• ID
  rs219792465
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:75103534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTGACAT TACAAAGCCC
  TAGTCTCTCC CACTTCTGAC TTTCTCTGCT CTACCCTGGG CCTCTCAGTT TCAGTCCTAC
  TAACACTTTG GACCAGATAA TTTGGTTATA AGGAGCTGTC CACTGCATCA AAGAATGTTT
  AATAACCTCT CTAAACACTG AATCCCAATA ACAATACTCT TTCTTCCCAT TTATGACATC
  Y
  AAGAAGCATC TCCAGACATT GCTAAATGTT CCCCATGGAG CAAAAATCAC CCCCCAGTTG
  AAAACCACTG CTCTAGATAA AATAGGCTCT AGATAAAATA AATAGGCTTT CAGCATATGC
  TATTTCTATC CTATAATCCT ATCTTTTATC TTTGCATATG ATGGAAGCGT GATCAAGCAT
  GACCTTATTA ACTGTGCATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350135478	MGP_WTSI_1_75123464	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219792465					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350135478	MGP_WTSI_1_75123464	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:75103534 () rs orientation: forward

Symbol	Name	Function Class
Cpgi409	CpG island 409	1520 bp distal
Nhej1	non-homologous end joining factor 1	1664 bp upstream
Rr29642	regulatory region 29642	933 bp distal
Rr371532	regulatory region 371532	983 bp downstream
Slc23a3	solute carrier family 23 (nucleobase transporters), member 3	within coordinates
Tssr7483	transcription start site region 7483	1660 bp upstream
Tssr12335	transcription start site region 12335	1940 bp upstream
Tssr12336	transcription start site region 12336	1680 bp upstream
Tssr12337	transcription start site region 12337	1635 bp upstream
Tssr12338	transcription start site region 12338	1687 bp downstream
Tssr12339	transcription start site region 12339	1711 bp downstream
Tssr12340	transcription start site region 12340	1753 bp downstream