rs219792873 SNP Detail

Summary

• ID
  rs219792873
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:84564079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCCAGCT CAGGTCTCAG
  ACCTCTTTCC GTCAGCCTTC CAACTTCCCA ACCCCCAATC AGCCTCAGAC CACAGGCAGG
  TTCTTTGCCT GGCGAGCACT CTGCAGCTAT GTCAAACAAT GCAACCAAAG ATACCAGAGA
  GATCCGGAAA CGCCAGCAAA AGCGGACAAA CATTAATTGG AGATGAAGAG CGGGGATTTA
  R
  TCTCCGCAGC GGCGCTTGGA GCGCTGCGAC CGGCTGACAC AAGCTCCACC TCACCCATCC
  ACCCCAGGGC GCCTTGGTCC CCACCTCCAT TTCCCTACCT TCGTTGCTGG GGCTGGCCAA
  AAGGGTCCGG AGCGCCGCAC ACAAGAGAAG GCACGTCCAG AGGGGGCCCT TTAGAGGTGC
  CGAATAGCAG CCTGCCAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321595492	CHEV_5_84845245	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219792873					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:84564079 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16022	CpG island 16022	within coordinates
Cpgi16023	CpG island 16023	662 bp proximal
Epha5	Eph receptor A5	within coordinates
Gm42163	predicted gene, 42163	518 bp upstream
Gm71976	predicted gene, 71976	1236 bp upstream
Rr613965	regulatory region 613965	within coordinates
Rr613966	regulatory region 613966	368 bp proximal
Rr613967	regulatory region 613967	576 bp proximal
Rr613968	regulatory region 613968	1229 bp proximal
Rr613969	regulatory region 613969	1247 bp proximal
Tssr51507	transcription start site region 51507	892 bp downstream
Tssr51508	transcription start site region 51508	923 bp downstream
Tssr51509	transcription start site region 51509	1078 bp downstream
Tssr51510	transcription start site region 51510	1104 bp downstream
Tssr51511	transcription start site region 51511	1148 bp downstream
Tssr51512	transcription start site region 51512	1175 bp downstream
Tssr51513	transcription start site region 51513	1258 bp downstream