rs219794227 SNP Detail

Summary

• ID
  rs219794227
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:30852638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAACCGTA CAGGTCACAC
  TGTCCCAGGG ATATTAAACT GTTGAGGGAT GAGCATCTTG TTCATTTTTG GTAGAAAACA
  GAGATGCTTT CCATTCCCCT GCCTCTAGGA GTGTTTTACC CAAACTTCCA ATTCTCTATA
  CAGCAAAGGA AGGAGATTCA ACCACTCCTT TGCAGTCCTA TAAAAGTGGA GAGAGCTTGC
  K
  GTGCTGGGGC CTTTCCTTAG GTTCTGTAGT GACACAAGTT AATTTAAGAG ACTCCTCTTT
  GTAGGTAACA AGTCCCAAGG AGTCTTTTGC ATAGGCCAAT CCTTCACAGC TACAGAAATG
  GATTGGATCG GCCAAACGAA GTAAGAATGA CTCAACTGTA GGCACCCTCA CATAAGCAAA
  GAGCTGCGTA GTTGGGGGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322889043	CHEV_9_30748927	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219794227					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:30852638 () rs orientation: forward

Symbol	Name	Function Class
Adamts8	ADAM metallopeptidase with thrombospondin type 1 motif 8	1220 bp upstream
Cpgi21523	CpG island 21523	916 bp proximal
Gm10700	predicted gene 10700	within coordinates
Gm69354	predicted gene, 69354	within coordinates
Rr675918	regulatory region 675918	556 bp distal
Rr675919	regulatory region 675919	808 bp distal
Rr675920	regulatory region 675920	730 bp proximal
Tssr84208	transcription start site region 84208	1199 bp upstream