rs219794614 SNP Detail

Summary

• ID
  rs219794614
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79489932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCCTGAGT TCTAAAGAAA
  GCAGGCTGAG CAAGCCAGGA AGAGGAAGCC AGTAAGTAGC ACCCCTCCAT GACCTCTGTA
  CCAGCTGCTG TCTCCAGGTT CCAGCTCTGC TTGAGTTCCA GCCTGACCTC CTTCAGAAGA
  TGGACAGCTA CATGGAAGCA TAAGCCAAAT AGGCCCTTTC TTCCTCTGTT TGCTTTTGGT
  Y
  CCCGTGTTTC ATCACAGCAA TAGTAACCCT AACTACAACG GTGGTCAAGA GCTCTTCAGG
  AAGATCTGAG TTCAATTCCC AGCACTCACT GTTTGTAATA GGTAATAACT GTTTGTAACT
  TCAGTTCCAG AGGACCTGAT GCCCTCTTCT GGCCTCCAAG GCATAGAAGT GGTACATGGA
  CGTACGCATA GGCAAAGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372032920	MGP_WTSI_7_86985070	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219794614					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372032920	MGP_WTSI_7_86985070	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79489932 () rs orientation: forward

Symbol	Name	Function Class
Anpep	alanyl aminopeptidase, membrane	within coordinates
Tssr67371	transcription start site region 67371	1645 bp upstream
Tssr67372	transcription start site region 67372	1833 bp upstream
Tssr73153	transcription start site region 73153	1864 bp upstream
Tssr73154	transcription start site region 73154	1702 bp upstream
Tssr73155	transcription start site region 73155	1492 bp upstream
Tssr73156	transcription start site region 73156	1428 bp upstream
Tssr73157	transcription start site region 73157	1230 bp upstream
Tssr73158	transcription start site region 73158	980 bp upstream
Tssr73159	transcription start site region 73159	930 bp upstream
Tssr73160	transcription start site region 73160	686 bp upstream
Tssr73161	transcription start site region 73161	719 bp downstream
Tssr73162	transcription start site region 73162	736 bp downstream
Tssr73163	transcription start site region 73163	795 bp downstream
Tssr73164	transcription start site region 73164	940 bp downstream
Tssr73165	transcription start site region 73165	1501 bp downstream
Tssr73166	transcription start site region 73166	1542 bp downstream
Tssr73167	transcription start site region 73167	1750 bp downstream
Tssr73168	transcription start site region 73168	1762 bp downstream
Tssr73169	transcription start site region 73169	1790 bp downstream
Tssr73170	transcription start site region 73170	1821 bp downstream
Tssr73171	transcription start site region 73171	1892 bp downstream
Tssr73172	transcription start site region 73172	1920 bp downstream
Tssr73173	transcription start site region 73173	1936 bp downstream