rs219797452 SNP Detail

Summary

• ID
  rs219797452
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32876958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACACAAAA TAAAACACAT
  GTCAGCAAGC TCCAGCATCC TCACCTCTTC ATGGCCACGT TGTTGAGGAG TGTGAGGCCC
  AGATGGTCAG CTCAGTTGCT CAAGGTCATA GGACTGGTGA ATGGCAGAGC CTCACTTTGT
  CTGGGGCTCT CTGATGCCAA GCCTGAGCTT TCATTAAAGG CTGCTGAGGG TTAGGGGATG
  Y
  ACAAGGGATG GTTGAAGTTA GCATATTCCT GATGTGTAGC AAAGGAACTA AGACTCTTAC
  CTCTGCCTGG TTATGTCTTC ATTCTTTCAC AAAAGTAATG GAAAGCACAG TCTAAGTGCT
  GGCCACAGCT GGTCAAATAG GAAAGGCATG GTCTGCATGT GCATCTTCAT ACTAAAGTAC
  ATTGATGTCT CACAAGCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325362702	CHEV_17_32794929	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219797452					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32876958 () rs orientation: forward

Symbol	Name	Function Class
Cyp4f40	cytochrome P450, family 4, subfamily f, polypeptide 40	916 bp upstream
Gm65897	predicted gene, 65897	within coordinates
Tssr143725	transcription start site region 143725	894 bp upstream
Tssr143726	transcription start site region 143726	982 bp upstream
Tssr143727	transcription start site region 143727	1005 bp upstream
Tssr143728	transcription start site region 143728	1025 bp upstream
Tssr143729	transcription start site region 143729	1037 bp upstream
Tssr143730	transcription start site region 143730	1060 bp upstream
Tssr143731	transcription start site region 143731	1082 bp upstream
Tssr143732	transcription start site region 143732	1096 bp upstream