rs219799428 SNP Detail

Summary

• ID
  rs219799428
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135301749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTTTCT TTTCTTTTCT
  TTTCTTTTCT TTTCTTTTCT TATTTGTTTG TTTATTTATT TATTTATTTA TTTATTTGGT
  GGTGTTATCG TTTTTGAGAT AGTCTCACTT TGTAGCCCAG GCTGGTCTGG AACTCTTTAG
  TGATGATCTT CCCGCCTCAG CCTTCTGAGT GCTGGGATTA CAGGTGCGAG CCACCAGGCC
  V
  GGCTAGCAAC TTCCATATTA TTTTAAAAGG TAGCGGTACT CTATAGAGGG CAAGCGCCTT
  AGCTGGATCA CAGTGCACCA GCCTGGAAAC AAAACCCAAG TCTTCCTGCC CTCTCACCAG
  AGCGTCTACC AAGGCACTCT GCTGTTTGAA TGTTAGTGTT AACTCAGCAC ACTCCCTCCC
  AGGACCTGTC AGGATCCAGA                                            
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351539940	MGP_WTSI_1_137270588	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219799428					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351539940	MGP_WTSI_1_137270588	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135301749 () rs orientation: forward

Symbol	Name	Function Class
Cpgi790	CpG island 790	425 bp proximal
Rr12587	regulatory region 12587	1452 bp proximal
Rr28595	regulatory region 28595	348 bp distal
Rr28596	regulatory region 28596	within coordinates
Shisa4	shisa family member 4	within coordinates
Tssr13841	transcription start site region 13841	1679 bp upstream
Tssr13842	transcription start site region 13842	801 bp upstream
Tssr13843	transcription start site region 13843	590 bp upstream
Tssr13844	transcription start site region 13844	556 bp upstream
Tssr13845	transcription start site region 13845	528 bp upstream
Tssr13846	transcription start site region 13846	47 bp upstream
Tssr13847	transcription start site region 13847	408 bp downstream
Tssr13848	transcription start site region 13848	908 bp downstream
Tssr13849	transcription start site region 13849	925 bp downstream
Tssr13850	transcription start site region 13850	944 bp downstream
Tssr13851	transcription start site region 13851	1088 bp downstream
Tssr13852	transcription start site region 13852	1212 bp downstream
Tssr13853	transcription start site region 13853	1222 bp downstream
Tssr13854	transcription start site region 13854	1239 bp downstream
Tssr13855	transcription start site region 13855	1257 bp downstream
Tssr13856	transcription start site region 13856	1271 bp downstream