rs219800356 SNP Detail

Summary

• ID
  rs219800356
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70729676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAG CAGGAGGATC TTTGTGAGGT
  C
  AAGGCCAGTC TGGGCTGCAT GAGGC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322699451	CHEV_8_72800925	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219800356					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70729676 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20447	CpG island 20447	1310 bp proximal
Gm38427	predicted gene, 38427	within coordinates
Rr177422	regulatory region 177422	276 bp distal
Rr186738	regulatory region 186738	1124 bp proximal
Rr190310	regulatory region 190310	1877 bp distal
Tssr2595	transcription start site region 2595	1047 bp upstream
Tssr77724	transcription start site region 77724	1075 bp upstream