rs219805378 SNP Detail

Summary

• ID
  rs219805378
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153063573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agggagagg gagagggaga gggagaggga
  gagggagagg gagagagaga gagagaggga gCACACTTGT TTCTGAGTGC TATGATCCTT
  GCATATCTAC CATCCACTAA CTGAAAATAT TGATACTTCT TGTTTTAGAA AAGTCCAGGT
  M
  CACAGTGTTG GAGGAGCAGG GCATAGGGCC CTGCAAAATC AAACCTTAAA GGCAAAATTT
  GTTTTTTAGC ACAGATTTTC ATTGTCTATC ATATCTCAAA TGCTTTCATT TTCATCTGCT
  ACCCTCTTTA GTGATAATAA TAGTAACAAA                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320071250	CHEV_1_155034957	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219805378					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153063573 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	1360 bp distal
Lamc2	laminin, gamma 2	1380 bp upstream
Rr13130	regulatory region 13130	373 bp distal
Rr25076	regulatory region 25076	419 bp proximal
Rr28719	regulatory region 28719	1172 bp distal
Tssr14250	transcription start site region 14250	1771 bp upstream
Tssr14251	transcription start site region 14251	1735 bp upstream
Tssr14252	transcription start site region 14252	1705 bp upstream
Tssr14253	transcription start site region 14253	1691 bp upstream
Tssr14254	transcription start site region 14254	1672 bp upstream