rs219806237 SNP Detail

Summary

• ID
  rs219806237
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54798801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCTGGCT GTCCTCAGAC
  TTGCTCTGTG GACCAAGATG GCCTCAAACT CAGGTCTGCT TGCCTCCTAA ATGCTGAGAT
  CAAAGGTGTG CGCCACCACT GCCCAGCTCA ACAGTCCATT CTCAAGCAAA TGTTAAAGGC
  AGACTAGCTC AGCCCTGCTC TTAACTCAGT ATCCATCCAG GAAAGGGCAC CTAGGGTCAG
  K
  GTGTATAAAC GAGGCTGGCA ATGGCTTAAC CCGGTATCTG ACTGGAACCA TGTCTCCTTA
  ATGTCTCTAT CCTGTCTTTT CTTCTCAGTG AGGGCAAACA GAAGCCTAAG GGCCAAAGCC
  TGATGGCCCA AGGGCAAACA CTTTGGGGCC AAGCAGACCC AGGCCACTTG GCTGGCACCT
  GCAGGAGAGT TCCTGGGCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383428878	MGP_WTSI_11_54721477	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219806237					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383428878	MGP_WTSI_11_54721477	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54798801 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	within coordinates
Rr447428	regulatory region 447428	1652 bp distal
Rr447429	regulatory region 447429	1069 bp distal
Tssr3502	transcription start site region 3502	1666 bp downstream
Tssr101551	transcription start site region 101551	1710 bp downstream
Tssr101552	transcription start site region 101552	1647 bp downstream
Tssr101553	transcription start site region 101553	1194 bp downstream
Tssr101554	transcription start site region 101554	1182 bp downstream
Tssr101555	transcription start site region 101555	1140 bp downstream
Tssr101556	transcription start site region 101556	845 bp downstream
Tssr101557	transcription start site region 101557	815 bp downstream
Tssr101558	transcription start site region 101558	798 bp downstream
Tssr101559	transcription start site region 101559	775 bp downstream
Tssr101560	transcription start site region 101560	729 bp downstream
Tssr101561	transcription start site region 101561	560 bp upstream
Tssr101562	transcription start site region 101562	584 bp upstream
Tssr101563	transcription start site region 101563	634 bp upstream
Tssr101564	transcription start site region 101564	648 bp upstream
Tssr101565	transcription start site region 101565	1077 bp upstream
Tssr101566	transcription start site region 101566	1127 bp upstream
Tssr101567	transcription start site region 101567	1488 bp upstream
Tssr101568	transcription start site region 101568	1564 bp upstream
Tssr101569	transcription start site region 101569	1647 bp upstream
Tssr101570	transcription start site region 101570	1669 bp upstream
Tssr101571	transcription start site region 101571	1723 bp upstream
Tssr101572	transcription start site region 101572	1818 bp upstream
Tssr101573	transcription start site region 101573	1855 bp upstream
Tssr101574	transcription start site region 101574	1869 bp upstream
Tssr101575	transcription start site region 101575	1917 bp upstream
Tssr101576	transcription start site region 101576	1931 bp upstream
Tssr101577	transcription start site region 101577	1960 bp upstream
Tssr108006	transcription start site region 108006	690 bp upstream
Tssr108007	transcription start site region 108007	589 bp downstream
Tssr108008	transcription start site region 108008	649 bp downstream
Tssr108009	transcription start site region 108009	665 bp downstream
Tssr108010	transcription start site region 108010	1086 bp downstream
Tssr108011	transcription start site region 108011	1682 bp downstream
Tssr108012	transcription start site region 108012	1716 bp downstream
Tssr108013	transcription start site region 108013	1810 bp downstream
Tssr108014	transcription start site region 108014	1817 bp downstream
Tssr108015	transcription start site region 108015	1900 bp downstream
Tssr108016	transcription start site region 108016	1952 bp downstream