rs219807039 SNP Detail

Summary

• ID
  rs219807039
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:66417828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTTCCTG TATGTGGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT AAGGGTATCC AAAGAAGACA GAAGGGAGCA
  CTGGATCATG CTGAAGCTGG AGTTACAGGT GACTGAGTAG ATCAAAGTGG GTGTTGCAAC
  CTATCTTGGA TCCCCTGCGC CAGTAGTTAG TACTCTTAAC TTCTGAGCTC TTTTTCCAGG
  Y
  CCTGTACACA TACATCTTTA AAATCATTTC CTGGTTGCTA TGGCAATCTT TGCAGGCCTA
  GTGCTGCTCC CAGCTGTTTT TTGGCCGTGG GGTGGGGTGG ATTTCTGTCA GCAATTCTTA
  TGTGGCTGCT GACCGACTAA GAGCTCATCA GCTGTGGGCT GTCTGTGGCT TCTTTGGCCC
  TACGGCTTTG GCTTGCTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398793019	MGP_WTSI_17_66460173	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219807039					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398793019	MGP_WTSI_17_66460173	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:66417828 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9425	CpG island 9425	621 bp proximal
Gm65422	predicted gene, 65422	within coordinates
Rr370304	regulatory region 370304	639 bp upstream
Rr405415	regulatory region 405415	286 bp upstream
Rr529887	regulatory region 529887	within coordinates
Rr529888	regulatory region 529888	641 bp proximal
Rr529889	regulatory region 529889	823 bp proximal
Tssr145594	transcription start site region 145594	696 bp upstream
Tssr145595	transcription start site region 145595	772 bp upstream
Tssr149109	transcription start site region 149109	683 bp downstream
Washc1	WASH complex subunit 1	712 bp upstream