rs219811816 SNP Detail

Summary

• ID
  rs219811816
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:119145242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAATAGGC AGATCTTCCT
  TCCTTCCATG TCGCCAGGAT CTGGTACCAA TCAGTACCTA AGTACTGTGC CTTAGTACTT
  CTCATAAATA CTGTGCCTTA GTACTTCTCA GTTGTAGGAA TGATGACCAA GATCCACAGC
  TGCCTTTTGG TGCTAATAAA GTTTTACTGG CACATGGTGA CACCCTTCGA CAGTGTTGCT
  W
  GCATGCTACA ACAGCACCCT TAAATATGTA GCTAGGACAG AGAAAGTATG TGTCTTGCAG
  TAGTTGGCTA ACCTCTAACC AAGTGGATTA ATTAGCTCCC TGTTTTGCTT TTTGCACCTA
  GCAAACATAT AACCTGTGCA GTCTCTATAT TCAATAGAGG GTCTGGATAA ATGACTCTGA
  CTTCTCACTT CTCTGGGTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321664022	CHEV_5_119457186	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219811816					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:119145242 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16442	CpG island 16442	748 bp distal
Rr619043	regulatory region 619043	536 bp distal