rs219820169 SNP Detail

Summary

• ID
  rs219820169
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131404528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAAACAA GGGCCGGGGC
  CGGCTCCCTG CTCCCTGCTC CCCTCTCCAA GCGTGTCCTG GCGAGCGGTG GCTCCTCCGG
  GAGCGTCAGT GCAGGCGGCG GCCTCTGCAG CGCAGGGGAC TCTGCGCGGG GGCGGGACGG
  AGGAGGGGCG GCGGGGAGGG AGGAGGGGGC GGCCGGCGCG AGCCAGCGAA GGGGCTCCGC
  K
  CGTCCAGCGG CTGCGGGGGT CCTCGCCGGT GCTCACGACC GTCCTCTGCC CTAGCTGTCC
  CCTTATCCTC CTTTCCTCAG CTCTCCTGCA CCCCGGCTTT TGCCCCAGCG CTCCTCGCTG
  CCTCCCTTCC TCTCTCTGGA CTTGCGGTCA CTCTCTGCTT GCCCTTGCCC TAGCGGAGCA
  TACAAGGTGC GATTCCCCGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355685243	MGP_WTSI_2_131388344	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219820169					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355685243	MGP_WTSI_2_131388344	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131404528 () rs orientation: forward

Symbol	Name	Function Class
Adra1d	adrenergic receptor, alpha 1d	325 bp upstream
Cpgi12295	CpG island 12295	within coordinates
Gm14285	predicted gene 14285	within coordinates
Rr55657	regulatory region 55657	within coordinates
Tssr20277	transcription start site region 20277	989 bp downstream
Tssr20278	transcription start site region 20278	957 bp downstream
Tssr26401	transcription start site region 26401	106 bp upstream
Tssr26402	transcription start site region 26402	73 bp upstream
Tssr26403	transcription start site region 26403	147 bp downstream