rs219838286 SNP Detail

Summary

• ID
  rs219838286
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:128769644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGTGGGT GAAGGAATGA
  GTGCACAGTG CAAAGGTGGG GCGGCAGGGC GCAAGGCAAT GGGTGCGGCG GGTGCTAGAC
  CTGAGCCGCG GGTCTGGGCA TCCCCGGACC CTGGGTCTTG CGCCTGAGTC TATCTGCTGC
  TGGGGGCATG GGGCGGGAAG GGGCGGGGTC TGGGGCGGTG TCCCAGAGAG GAGGCGGAGC
  Y
  GGAGCCGGAG CCGGTGCTCC CAAGGCGTGC AGTAGTTGTA CTTAGCTGGT CCTGGGGCAG
  CAGCGGGAAG GGACTGAAGA GGGGTGCTGA GGTGAAAGAT TGGAAGACCC GGAAAGATCA
  GCTAGATTTC GGAAACCAGA AACACCCTCG GGGAGACCTG GGGCTCCCGG CGCGCGACGA
  TTTCCTCGCA CTAGCTGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323536810	CHEV_10_128370831	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219838286					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128769644 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2425	CpG island 2425	within coordinates
Itga7	integrin alpha 7	mRNA-UTR
Rr441373	regulatory region 441373	1968 bp distal
Rr441374	regulatory region 441374	within coordinates
Rr441375	regulatory region 441375	1543 bp proximal
Rr441376	regulatory region 441376	1813 bp proximal
Tssr96480	transcription start site region 96480	12 bp downstream
Tssr96481	transcription start site region 96481	1 bp upstream
Tssr96482	transcription start site region 96482	7 bp upstream