rs219838823 SNP Detail

Summary

• ID
  rs219838823
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135961587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAAACTC CCTACCAGCC
  CTTAGGTGCA TTGCAGCCTC TGTGTCATTG TGTGTGACAT CACTGGGTTG CTATGGATAT
  AGGTGCGAGG TCACTCGCTC TCCTGTGGAA CTAGAAATAG GGGAAAATTA GAGTCTAGAT
  ATCACAAACT GAAGACATTT CCAGCATTAG TGACCTACTG AGAGTCCAGT TTGTATCCTT
  Y
  AATGGTTTAA CTGTTATTTA AAAAAGGCAA CTGTAACAAC ACACTAATAC AATAGTATTT
  CTGGTTTTAA AACCAATTAT TTTTTGTAAA ACAAAAAACA TCTGTAGCTT ATTTAATTAG
  GAAAGGATAA GCACCTGGCC TTTTGAAAAA ACAAAGAAAA AAAATCATTT AAAATTAAAT
  AGTCTCTCTC TCTCTCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366846025	MGP_WTSI_5_136408603	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219838823					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366846025	MGP_WTSI_5_136408603	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135961587 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16773	CpG island 16773	1205 bp proximal
Gm40346	predicted gene, 40346	within coordinates
Gm57297	predicted gene, 57297	1948 bp upstream
Rr378682	regulatory region 378682	1016 bp upstream
Rr622478	regulatory region 622478	20 bp distal
Rr622479	regulatory region 622479	222 bp proximal
Rr622480	regulatory region 622480	536 bp proximal
Rr622481	regulatory region 622481	1811 bp proximal
Rr622482	regulatory region 622482	1959 bp proximal
Tssr53779	transcription start site region 53779	967 bp downstream
Tssr53780	transcription start site region 53780	1824 bp downstream
Tssr53781	transcription start site region 53781	1857 bp downstream
Tssr53782	transcription start site region 53782	1886 bp downstream
Ywhag	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	within coordinates