rs219839103 SNP Detail

Summary

• ID
  rs219839103
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:30170917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAACATACT TGTGGGGCTT
  TGACCGAAAA CTCACTATTT GCTGACTCTG GAGCTCTAGC TCACCTCCCA AAAGGCCATT
  TCATCTTGGT AAGATGGACA CTCCCTGGCC TGTGGCCTCA GTTTCCCCCA CTATAAATCT
  CTGAACTTAG AGGAGTCAAG CGGGGGTGGA CAGCTATAGT TACTGGTGTG TTCTATGTGG
  Y
  TCAGAGTGTT TCTCAGAATC ACTAAGGAGT CCCCTGAAAT GGAGCTTTGT GGCCCACGAG
  GAAACCTACA GTTTAATATG AACCTGGGGA ATGTGAGGCT GGGAAGGAGA AGCTATTTAG
  AGTTGTGCTT GGAAACAGCT TTCTCTAAAG ATGCAGGATA TTTTGGAAAC AGTATTCTAA
  AATCTTTTTC CCCCCCCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367828101	MGP_WTSI_6_30120918	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219839103					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367828101	MGP_WTSI_6_30120918	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:30170917 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17248	CpG island 17248	1998 bp proximal
Mir96	microRNA 96	1367 bp upstream
Mir183	microRNA 183	1181 bp upstream
Mirc35	microRNA cluster 35, including Mir182 through Mir183	1181 bp distal
Mirc35hg	microRNA cluster 35, host gene	within coordinates
Mirc40	micro RNA cluster 40, including Mir96 through Mir183	1181 bp distal
Rncr4	retina expressed non-coding RNA 4	1975 bp upstream
Rr146072	regulatory region 146072	516 bp distal
Rr146073	regulatory region 146073	483 bp proximal
Rr146074	regulatory region 146074	1283 bp proximal
Tssr55327	transcription start site region 55327	1942 bp upstream