rs219844942 SNP Detail

Summary

• ID
  rs219844942
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:84353270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aacacttgc tgctcttgca gaggacccag
  gttccattgc cagcacctat gttggacagg tcacaactat ccacagctcc aattccaggg
  aatctgacac cttattcgga cctctgaagg cctggacatg tgtcagatgc acacagacac
  W
  cacacaCACG TAGAGCTCCA AGTAAGCTCA GCCTGCTTTC TTATAGAGCT CTAAGTAAAT
  ACAAGTGTTC TTTGCTTAGC ACAGCACAGT TAGACACTGA TGTACTCACT AACTGAAAAA
  TACATAGGTG AATAGAGTTT TGCTTTCAGT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323369368	CHEV_10_83980151	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219844942					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:84353270 () rs orientation: forward

Symbol	Name	Function Class
E230014E18Rik	RIKEN cDNA E230014E18 gene	within coordinates
Gm34405	predicted gene, 34405	within coordinates
Rr217062	regulatory region 217062	1470 bp distal
Rr229121	regulatory region 229121	within coordinates
Rr229122	regulatory region 229122	731 bp proximal
Tssr3295	transcription start site region 3295	365 bp upstream
Tssr94890	transcription start site region 94890	691 bp downstream
Tssr94891	transcription start site region 94891	581 bp upstream