rs219851182 SNP Detail

Summary

• ID
  rs219851182
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141389148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTACTTT TTCCATCGTG
  AGTTCTGGAG ATTGAACCCA AGTCATCCAG TTTGCACACC AACTCTGGCT TGCAAGCCAG
  TTTCCCTGCT TTGGCCATCT TACCAGGTCT GCCATGGCTG CTTCAGCCTC GGTGTCTATG
  GTGGGAGCTG AACTTTTTTT TTTTTTTAAA TCTGTTTATT TATTTTATGA ATATGAGTAC
  M
  ATGTTGCTGT CTTCAGACAC ACCAGAAGAG GGCATCAGAT CTCATTACAG ATGGTTGTGA
  GCCACCGTAT GGTTGCTGGG AATTGAACTC AGGACCTCTG GAAGAAAAGT CAGTGATCTT
  AACTGCTGAG CCATCTCTCC AGCCCCGGAG CTGAACTTTC TAGCTGTTGT TTTGTTTTGT
  GAGGTTTTTG TTTGTTTGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363526216	MGP_WTSI_4_141217752	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	A	A	A	A	C	C	A	C	C	A	A	C	C	C	A	A	C	A	C	C	C	C	A	C	C	A	C	A	A	C	C	C	C	C	C	C	A	C	C	C	A	C	A	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219851182					SNP	C	C	C	A	A	A	A	C	C	A	C	C	A	A	C	C	C	A	A	C	A	C	C	C	C	A	C	C	A	C	A	A	C	C	C	C	C	C	C	A	C	C	C	A	C	A	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363526216	MGP_WTSI_4_141217752	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141389148 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15240	CpG island 15240	1347 bp proximal
Gm70264	predicted gene, 70264	799 bp upstream
Plekhm2	pleckstrin homology domain containing, family M (with RUN domain) member 2	within coordinates
Rr603849	regulatory region 603849	1883 bp distal
Rr603850	regulatory region 603850	1768 bp proximal