rs219852866 SNP Detail

Summary

• ID
  rs219852866
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:3546783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCACCACC CCACCCCCCT
  GCACACCCCA ACCAGTACTA GCCCAACAGC ACTGTTCCAG CAAAGCCATC CAGGGCTGCC
  AGCGGCAAGA GATGTGGTCA GCTCTCCTGT TCTCAAGGCT AGCTCACCAG CACCCATACC
  TCCAGAGCCA GCTCTACCAT GCTGCCCAAG GCCGGACCCA CTCTCCCAAG TGCGGCAGAC
  Y
  GTCAGGAGCT GGAACGGCTC TCCTGCTCGC ACACACTTGG GCTGGCTCAC TCATGCCTTC
  ACCATCAGGG CCAGCTCCAC TGTGTTGTCC AGGTGAGATG CAGGCTCTGC TCTCTAGAGT
  GCTGCTGCAG CTAGCAATGG TCAGGGACAG TTCATTCACT CTCATGACTC CAGGCCCAGT
  TCTCCCAACT GCTGTAGGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325087887	CHEV_16_3728919	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219852866					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3546783 () rs orientation: forward

Symbol	Name	Function Class
Tdgf1-ps1	teratocarcinoma-derived growth factor, pseudogene 1	1591 bp upstream
Tssr136822	transcription start site region 136822	1097 bp upstream
Tssr136823	transcription start site region 136823	1334 bp upstream