rs219858929 SNP Detail

Summary

• ID
  rs219858929
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5847964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAACAAGT AAGCCCCATC
  CCCCCCTCCC TCCACATTCC AGGAAAAACA AACTCACTGC AAGGTCTCAC ATCACACACT
  CACTAGCAGA ACAGAAGACA GAGGCAAGCG CTTATATGCA AAGTCCTGAG CAGCTCCATG
  AAGGATGAAA TGAGGCTCTG CAAAGGAAAA CTCTTTAAAC CCACATGCCT GACCCCACTC
  R
  TGGCTCAAGT GAGGTGACAA AAGGCTAAAG TGGATGAGAT GATCGTAAGC ATTTAAACTC
  AACATGCATA TTTGGAAATG TGGGGGAAAA GTGTCTTACC CTAGATGTTT AGCCATGGTC
  AAATTAGACC CCTGACTTTC TGGAAACAAA ATATGTAGTT ACCTTTTACT CTGACCATCA
  TCTCCCACCT GCCTAAGGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401662573	MGP_WTSI_19_5797936	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219858929					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401662573	MGP_WTSI_19_5797936	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5847964 () rs orientation: forward

Symbol	Name	Function Class
Gm55521	predicted gene, 55521	1064 bp downstream
Malat1	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	within coordinates
Mascrna	Malat1-associated small cytoplasmic RNA	1955 bp upstream
Tssr5415	transcription start site region 5415	1070 bp upstream
Tssr5416	transcription start site region 5416	621 bp upstream
Tssr5417	transcription start site region 5417	1090 bp downstream
Tssr5418	transcription start site region 5418	1573 bp downstream
Tssr157645	transcription start site region 157645	1555 bp upstream
Tssr157646	transcription start site region 157646	1453 bp upstream
Tssr157647	transcription start site region 157647	1366 bp upstream
Tssr157648	transcription start site region 157648	1199 bp upstream
Tssr157649	transcription start site region 157649	1107 bp upstream
Tssr157650	transcription start site region 157650	1042 bp upstream
Tssr157651	transcription start site region 157651	972 bp upstream
Tssr157652	transcription start site region 157652	832 bp upstream
Tssr157653	transcription start site region 157653	748 bp upstream
Tssr157654	transcription start site region 157654	694 bp upstream
Tssr157655	transcription start site region 157655	668 bp upstream
Tssr157656	transcription start site region 157656	635 bp upstream
Tssr157657	transcription start site region 157657	515 bp upstream
Tssr157658	transcription start site region 157658	409 bp upstream
Tssr157659	transcription start site region 157659	305 bp upstream
Tssr157660	transcription start site region 157660	209 bp upstream
Tssr157661	transcription start site region 157661	176 bp upstream
Tssr157662	transcription start site region 157662	83 bp upstream
Tssr157663	transcription start site region 157663	22 bp upstream
Tssr157664	transcription start site region 157664	89 bp downstream
Tssr157665	transcription start site region 157665	96 bp downstream
Tssr157666	transcription start site region 157666	121 bp downstream
Tssr157667	transcription start site region 157667	374 bp downstream
Tssr157668	transcription start site region 157668	421 bp downstream
Tssr157669	transcription start site region 157669	436 bp downstream
Tssr157670	transcription start site region 157670	456 bp downstream
Tssr157671	transcription start site region 157671	473 bp downstream
Tssr157672	transcription start site region 157672	522 bp downstream
Tssr157673	transcription start site region 157673	539 bp downstream
Tssr157674	transcription start site region 157674	569 bp downstream
Tssr157675	transcription start site region 157675	588 bp downstream
Tssr157676	transcription start site region 157676	599 bp downstream
Tssr157677	transcription start site region 157677	621 bp downstream
Tssr157678	transcription start site region 157678	633 bp downstream
Tssr157679	transcription start site region 157679	670 bp downstream
Tssr157680	transcription start site region 157680	725 bp downstream
Tssr157681	transcription start site region 157681	754 bp downstream
Tssr157682	transcription start site region 157682	772 bp downstream
Tssr157683	transcription start site region 157683	798 bp downstream
Tssr157684	transcription start site region 157684	814 bp downstream
Tssr157685	transcription start site region 157685	824 bp downstream
Tssr157686	transcription start site region 157686	839 bp downstream
Tssr157687	transcription start site region 157687	908 bp downstream
Tssr157688	transcription start site region 157688	958 bp downstream
Tssr157689	transcription start site region 157689	989 bp downstream
Tssr157690	transcription start site region 157690	1067 bp downstream
Tssr157691	transcription start site region 157691	1113 bp downstream
Tssr157692	transcription start site region 157692	1167 bp downstream
Tssr157693	transcription start site region 157693	1224 bp downstream
Tssr157694	transcription start site region 157694	1282 bp downstream
Tssr157695	transcription start site region 157695	1346 bp downstream
Tssr157696	transcription start site region 157696	1367 bp downstream
Tssr157697	transcription start site region 157697	1416 bp downstream
Tssr157698	transcription start site region 157698	1432 bp downstream
Tssr157699	transcription start site region 157699	1490 bp downstream
Tssr157700	transcription start site region 157700	1539 bp downstream
Tssr157701	transcription start site region 157701	1557 bp downstream
Tssr157702	transcription start site region 157702	1593 bp downstream
Tssr157703	transcription start site region 157703	1644 bp downstream
Tssr157704	transcription start site region 157704	1670 bp downstream
Tssr157705	transcription start site region 157705	1691 bp downstream
Tssr157706	transcription start site region 157706	1739 bp downstream
Tssr157707	transcription start site region 157707	1785 bp downstream
Tssr157708	transcription start site region 157708	1795 bp downstream
Tssr157709	transcription start site region 157709	1807 bp downstream
Tssr157710	transcription start site region 157710	1826 bp downstream
Tssr157711	transcription start site region 157711	1845 bp downstream
Tssr157712	transcription start site region 157712	1882 bp downstream
Tssr157713	transcription start site region 157713	1909 bp downstream
Tssr157714	transcription start site region 157714	1960 bp downstream
Tssr157715	transcription start site region 157715	1977 bp downstream