rs219859778 SNP Detail

Summary

• ID
  rs219859778
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88192882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATGATGC TGTGATACGG
  AGCAGGGGAG GTGGCTGGAC AGAGGCCAAG TGGCTACAGG GAGCTGCAAT GGAAGACTGC
  TCAGTACACA GGATGCCCTG GGGACCGTCC TCCAAAAGGA GAAACAAAAG TCTCTGCTGA
  GGTCTTCTTC CTCAAAGCAG CTGCTGACTA CACATAAGCA TCATGTCCAA CAGACAAACA
  M
  GCAATCAGCA CTCAGGACAC TCAGGGCCAG CCTGATGCTC CTGAGGTATC GTGAAACTTG
  GCCTGGTGAG CACAAGCTAC CGGGTATGAC AACTTGCACC TCTTTGTTGG CAGCCAAGAG
  TCTCTCACAA GTGTACTAGC AGTCTGTGCA GTTGAATCCT GCAGGACTCT TCTGTGACAG
  CCAGGAGAGA TTGACCGTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss350399230	MGP_WTSI_1_90161735	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs219859778					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350399230	MGP_WTSI_1_90161735	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88192882 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	within coordinates
Tssr12870	transcription start site region 12870	295 bp upstream