rs219860698 SNP Detail

Summary

• ID
  rs219860698
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:78070575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACGACAC AGTGGACATT
  GTGGTTAGCA AGCAAACTCG AGCTTCTTGG GAATACCTTG TTCATCATGT CATGGTAAGG
  GAGAACCCGG TGAAATGACA CAGGCAAAAT CTTCACAACC CCTGGAGCCA GGGAGGGAGG
  CCATCTTAAC CCAGCAGCGT CTGACTTCTA AGTTGCCTAA GACTCTCTCA ATGTTTAAAC
  W
  CCTTCTGGGG ACAGCAGAGT GCCTAGGCCT ATCTACTATC TAGGTAAACA GACCAGGATG
  TCATACAGAG TTAGACCCTC GTGGACAAAG TCTAACGCTA GTGAATAAAG AAACCTTAGC
  AGTAAAGTTG GTGTTCCTCA GCTTCCGACT GATATGACCT GTTTTCATGG GCCCTTGTTC
  TGTCACTTGT CCCCTAGGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383952638	MGP_WTSI_11_77993251	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219860698					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383952638	MGP_WTSI_11_77993251	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:78070575 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3334	CpG island 3334	348 bp distal
Gm73764	predicted gene, 73764	1177 bp upstream
Mir7653	microRNA 7653	862 bp downstream
Rpl23a	ribosomal protein L23A	1186 bp downstream
Rr402759	regulatory region 402759	1621 bp downstream
Rr451897	regulatory region 451897	1188 bp distal
Rr451899	regulatory region 451899	1749 bp distal
Rr451900	regulatory region 451900	977 bp distal
Rr451901	regulatory region 451901	468 bp distal
Snord4a	small nucleolar RNA, C/D box 4A	1938 bp downstream
Snord42a	small nucleolar RNA, C/D box 42A	1553 bp downstream
Tlcd1	TLC domain containing 1	within coordinates
Tssr103232	transcription start site region 103232	1602 bp downstream
Tssr103233	transcription start site region 103233	1054 bp downstream
Tssr103234	transcription start site region 103234	977 bp downstream
Tssr103235	transcription start site region 103235	763 bp downstream
Tssr103236	transcription start site region 103236	747 bp downstream
Tssr109377	transcription start site region 109377	1153 bp upstream