rs219864621 SNP Detail

Summary

• ID
  rs219864621
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128515869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tgtctcaaa accaaaacaa aacaaaacaa
  ggtgtgacag gtcctgagga acatctgaag ttgaccACCA AAGGAATAAT GCTTGTGCAC
  ATATGTGAGC CCACACAGAC ACACCCAGGA GGGTCTCCGG GAAGCCATAA ATGTGTGCAT
  Y
  ATTCTACTTT CCCAAACATG TTATTACTAA GAGCCAGCAG AAATGATGAC ATAGCACACA
  GCCAAGTTAA GTTTATCATT GACTTTTATT AACAATGTAA TACAAGACTG TACATTTGTA
  GGGAGTGAAA TCAATCTACT CTTGAAAACT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319965145	CHEV_1_130484709	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219864621					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128515869 () rs orientation: forward

Symbol	Name	Function Class
Cxcr4	C-X-C motif chemokine receptor 4	67 bp downstream
Rr12058	regulatory region 12058	269 bp distal
Rr28453	regulatory region 28453	731 bp proximal
Tssr195	transcription start site region 195	1191 bp upstream
Tssr13461	transcription start site region 13461	286 bp downstream
Tssr13462	transcription start site region 13462	472 bp downstream
Tssr13463	transcription start site region 13463	568 bp downstream
Tssr13464	transcription start site region 13464	625 bp downstream
Tssr13465	transcription start site region 13465	643 bp downstream
Tssr13466	transcription start site region 13466	708 bp downstream
Tssr13467	transcription start site region 13467	755 bp downstream
Tssr13468	transcription start site region 13468	844 bp downstream
Tssr13469	transcription start site region 13469	897 bp downstream
Tssr13470	transcription start site region 13470	992 bp downstream
Tssr13471	transcription start site region 13471	1061 bp downstream
Tssr13472	transcription start site region 13472	1130 bp downstream
Tssr13473	transcription start site region 13473	1143 bp downstream
Tssr13474	transcription start site region 13474	1199 bp downstream
Tssr13475	transcription start site region 13475	1223 bp downstream
Tssr13476	transcription start site region 13476	1240 bp downstream
Tssr13477	transcription start site region 13477	1301 bp downstream