rs219864718 SNP Detail

Summary

• ID
  rs219864718
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58277838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGAAGGAGA ACAATGTGTC
  TTCATCATTG CGGAGATGGT AAATGGTAAG ACTGGAGCTT CAGCTACTTA AATGGGCTCA
  AATTGAAACG AGATTCAAGT TGCTGTGCTG CAGCAGAAGA GCTGGGGATC GAAGAAACAG
  AGGGAGGATT AGCTCAGGAC GTCTTTCAGT TAGAGACTGC CAGGAAGCCT TCTGCTGGTT
  R
  CTACTTCTGC TCTTTGTCTA GGGCTACATC TGGTTGCCAT TCTCCTGCCC TTCTGTAGTC
  ACACCCCAGG TTCAGCTATC TGACTGCCTG GCCCTCCTGG CAGTTGCTTC TTTACTCAAC
  TGCCACTGTT CTTTAGGTGT GGAGGTGTGT GACTGTTTGT TTGTTTGTTT GTTTTTGTTT
  TTCTCTGTGT AACCCTGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323690060	CHEV_11_58200514	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219864718					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58277838 () rs orientation: forward

Symbol	Name	Function Class
Lypd8	LY6/PLAUR domain containing 8	within coordinates
Tssr101739	transcription start site region 101739	251 bp downstream
Tssr101740	transcription start site region 101740	206 bp downstream
Tssr101741	transcription start site region 101741	188 bp downstream
Tssr108157	transcription start site region 108157	208 bp upstream
Tssr108158	transcription start site region 108158	176 bp upstream