rs219865241 SNP Detail

Summary

• ID
  rs219865241
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108636252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAAGGTCC TTGTAAATTC
  AAGGTCAAAA TCCGTGTTTG CCACCTCCAC TGTCTCCAGC CGCGAGCTCG ACTGGGTAAA
  GGGCTCAGTG AACTTGTGCT GCATAAATGT GGAGATTTCA CTGTGATCAA CCAAGAGGAT
  GGGGCGGGAG GAGGGACCCG GGCGGGGGGG GGGGTCCTGC TTTCTCCTCT CTCTCTCCTG
  Y
  CCTGGAATAG ACTGCAAACA GCGCCACCCA AGTTCCTGGT TAGCAGCGGG ATCCCATGCA
  GATCCCTTGC AGCCCGGTGC GCGGGGGTCT AGGCTTGGAA GCCAGCGCGG AGAGGCTTGC
  AAGTGAGCCG AGCTCCGGCC CGCGTCCGGG CCACGTGAAG CGTCACGCCC CGCGCTGCTG
  CAGGGCAGGC GCCGTCGCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369592090	MGP_WTSI_6_108609285	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219865241					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369592090	MGP_WTSI_6_108609285	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108636252 () rs orientation: forward

Symbol	Name	Function Class
0610040F04Rik	RIKEN cDNA 0610040F04 gene	within coordinates
4833447P13Rik	RIKEN cDNA 4833447P13 gene	within coordinates
Bhlhe40	basic helix-loop-helix family, member e40	1338 bp upstream
Cpgi17812	CpG island 17812	within coordinates
Gm17055	predicted gene 17055	within coordinates
Rr636153	regulatory region 636153	781 bp distal
Rr636154	regulatory region 636154	280 bp distal
Rr636155	regulatory region 636155	146 bp proximal
Rr636156	regulatory region 636156	848 bp proximal
Rr636157	regulatory region 636157	1433 bp proximal
Rr636158	regulatory region 636158	1618 bp proximal
Tssr58067	transcription start site region 58067	670 bp downstream
Tssr58068	transcription start site region 58068	621 bp downstream
Tssr58069	transcription start site region 58069	521 bp downstream
Tssr58070	transcription start site region 58070	478 bp downstream
Tssr58071	transcription start site region 58071	373 bp upstream
Tssr58072	transcription start site region 58072	1143 bp upstream
Tssr58073	transcription start site region 58073	1189 bp upstream
Tssr58074	transcription start site region 58074	1228 bp upstream
Tssr58075	transcription start site region 58075	1325 bp upstream
Tssr58076	transcription start site region 58076	1481 bp upstream
Tssr58077	transcription start site region 58077	1564 bp upstream
Tssr62390	transcription start site region 62390	112 bp downstream
Tssr62391	transcription start site region 62391	511 bp downstream