rs219865298 SNP Detail

Summary

• ID
  rs219865298
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:26840563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTGCCCTT ACATAACCAC TGGCCCAGGT
  TGCCACAGGC CATGCATTTA TCCTCCCCTC GGGCACCTCA GCCTCTTCGT GCTGTGTGGC
  CCTTCAGCCC TGGCAGCTGA CCACTCCGGT TCTTCTGGCT AGGAGACAGG GAGCCATGCC
  Y
  GGGAGAAGCC TCCCCAGGGG CGGTGAGCTC ACCTGAGCCA CACCTGGGAT TTGCCTCACT
  GCTGAGGTCA TCTCCCGGGA TTGCCAAGAA TGACCTCATC CCATAATCCC CAAGCAGTGC
  GCAGATGTCT AGGTTTACCA GGTGGGAAAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325342568	CHEV_17_26758534	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219865298					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26840563 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ergic1	endoplasmic reticulum-golgi intermediate compartment 1			Intron
				mRNA-UTR
Gm17218	predicted gene 17218			within coordinates
Rr523902	regulatory region 523902			1123 bp distal
Rr523903	regulatory region 523903			130 bp distal
Rr523904	regulatory region 523904			within coordinates
Tssr143257	transcription start site region 143257			68 bp downstream