rs219872005 SNP Detail

Summary

• ID
  rs219872005
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96140765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTACTTAA CCCTGGATGT
  AAAAGACTAA CCCAAAACGT TTAAGACTAA CTGTGGGAAA GTGGGAGGGC GAAGAGCACA
  GCTAAGCTGC TCTTTGTTGA TATCAGAAAC CAGCCTGTCA TTCACTTTGG CGTTGAAGCA
  TGGCCTATCT CAGGGGGCAG GACCAGGACT CTTCCCTCCC ACAAGGGCTG GGCAGTTTCT
  R
  CAAGCTCAGA GAGCTCTGAG CAGTTTTTCA GGAGTTTCTC CTCCCCTTTT ACTGGGAAAT
  TCATGGTGCA TTTGCTCTGC CTTCAAAATG CGGTAAGGTC TTCTGCTTTC TAACTGACTG
  CCTTGGAGCC AGCAGATAGT CGGACATGTA CAATTCGAAT TATGCAGGTC TTGTGAGTAA
  GTTAATTTTA TTTTTAAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323107362	CHEV_9_96159131	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219872005					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96140765 () rs orientation: forward

Symbol	Name	Function Class
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	508 bp upstream
Tssr86589	transcription start site region 86589	1 bp downstream
Tssr86590	transcription start site region 86590	2 bp upstream
Tssr86591	transcription start site region 86591	16 bp upstream
Tssr86592	transcription start site region 86592	79 bp upstream
Tssr86593	transcription start site region 86593	94 bp upstream
Tssr86594	transcription start site region 86594	296 bp upstream
Tssr86595	transcription start site region 86595	534 bp upstream
Tssr86596	transcription start site region 86596	558 bp upstream