rs219877336 SNP Detail

Summary

• ID
  rs219877336
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3123455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGAAGGCCA AATCCAAACC AAAGCTTGAA CAAGTAAACT
  CAAGGTCATG ACAGTAATAC AAACCAAGGA AGGCACTGGA AACAGGAAAG CCACGGAGAA
  C
  ACCATGGACA CTGATGCTGG TTCTTTCATG TCCTTGTCAC CTCCTATGGC TACAATACAA
  CAATGACCAG AACCAAGTTG AGATGGGAAG GGTTTATTG                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323546760	CHEV_11_3073458	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219877336					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3123455 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2457	CpG island 2457	874 bp distal
Cpgi2458	CpG island 2458	within coordinates
Rr441481	regulatory region 441481	1005 bp distal
Rr441483	regulatory region 441483	1239 bp distal
Rr441484	regulatory region 441484	505 bp distal
Rr441485	regulatory region 441485	within coordinates
Rr441486	regulatory region 441486	518 bp proximal
Rr441487	regulatory region 441487	1723 bp proximal
Sfi1	Sfi1 homolog, spindle assembly associated (yeast)	within coordinates
Tssr106448	transcription start site region 106448	658 bp upstream
Tssr106449	transcription start site region 106449	126 bp upstream