rs219879359 SNP Detail

Summary

• ID
  rs219879359
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:81120524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCACCTC TAAGTACCTG
  TCTTGTGTTC CTGCCTCAAC TTCCCTTGAT GATCGACTGT GAGTTGGAAG ATGGAATAAA
  CCCTTCCCTC CTCCAAGTTT CTTTTGGTCA GCAAACTTGG ATACTGTGCT TCTGCCGTGT
  TGGTTCCTTT GACCCATAAA TCCCATTATT TCTGAAATTT CCTAGTGAAA AATACTAAGC
  Y
  GGGGAATAGG TTGGCACAGC CAGTCTTCTA GAGTGGTCTA CATTGCTCTT GGTACCTTAT
  CCCCAGCATG GGGGGGCTAG GCGCTCTGCC ATGTGGGCAG AGAGCAGGAA ACCGCTTCTT
  CTACTCTCTG TAGCACTGTT TGCACAGCCA GGCTACAGAG ATTCTAGGGA TTTTGCTCTT
  ACTCGAGCAT TGATTGGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375303770	MGP_WTSI_8_82917794	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219879359					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375303770	MGP_WTSI_8_82917794	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:81120524 () rs orientation: forward

Symbol	Name	Function Class
Gm30605	predicted gene, 30605	within coordinates
Tssr81894	transcription start site region 81894	1589 bp upstream
Tssr81895	transcription start site region 81895	1162 bp downstream
Tssr81896	transcription start site region 81896	1207 bp downstream
Tssr81897	transcription start site region 81897	1219 bp downstream
Tssr81898	transcription start site region 81898	1234 bp downstream
Tssr81899	transcription start site region 81899	1257 bp downstream
Tssr81900	transcription start site region 81900	1282 bp downstream
Tssr81901	transcription start site region 81901	1305 bp downstream
Tssr81902	transcription start site region 81902	1319 bp downstream
Tssr81903	transcription start site region 81903	1342 bp downstream