rs219879987 SNP Detail

Summary

• ID
  rs219879987
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:38720346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGAAAGGG GTGCCTCTGA
  GGGCCCATCC TGAACTGAGG CATCCCCTCC CCCTGAGGTA CCAGCCACAG AACAGTATAA
  TATGGAAATA GCTTATTTAG GACATGGGGA GGAGAGTTGA GGGGATAGTA GAGACAGAAA
  GACAGAGTAG AGGCCAGCCA TGAACATTTG GAGTTGGTTT GGGGGGGGGG GGCGGGGATC
  Y
  GGAAGAAAAG GGACAGAAGA GGAAGGGAGC AAGAGAAGAG AATGAGGAAG GGGCAAGTAG
  CCCCTTTTAT AGTGAGTCAG GCATACCTGT TTGTTGCAGG GAACTGTGGG GTGGTGCCTA
  GAAGGAATGC CAGTACCACC TGGTTAATTT CTCTCAAAAG TGGTGACTTC CAGCTACTAT
  CTCAATGATT CACCTGTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364599146	MGP_WTSI_5_38954242	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219879987					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364599146	MGP_WTSI_5_38954242	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:38720346 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15817	CpG island 15817	820 bp distal
Gm57313	predicted gene, 57313	862 bp downstream
Gm72219	predicted gene, 72219	374 bp upstream
Rr399063	regulatory region 399063	1024 bp downstream
Tssr46063	transcription start site region 46063	1078 bp downstream
Tssr50812	transcription start site region 50812	1862 bp upstream
Tssr50813	transcription start site region 50813	1832 bp upstream
Tssr50814	transcription start site region 50814	1381 bp upstream
Tssr50815	transcription start site region 50815	1363 bp upstream
Tssr50816	transcription start site region 50816	1323 bp upstream
Tssr50817	transcription start site region 50817	1271 bp upstream
Tssr50818	transcription start site region 50818	1211 bp upstream
Tssr50819	transcription start site region 50819	212 bp downstream
Tssr50820	transcription start site region 50820	241 bp downstream
Wdr1	WD repeat domain 1	81 bp upstream