rs219882422 SNP Detail

Summary

• ID
  rs219882422
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164116824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTT ACCTAACAGC AGAGAAAGAT
  Y
  TGATTTATGT AATAAAAAGA TGAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320605181	CHEV_2_164100640	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219882422					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164116824 () rs orientation: forward

Symbol	Name	Function Class
Svs4	seminal vesicle secretory protein 4	1052 bp downstream
Tssr21549	transcription start site region 21549	1048 bp upstream
Tssr21550	transcription start site region 21550	1154 bp upstream
Tssr27409	transcription start site region 27409	1074 bp downstream
Tssr27410	transcription start site region 27410	1097 bp downstream
Tssr27411	transcription start site region 27411	1134 bp downstream
Tssr27412	transcription start site region 27412	1172 bp downstream
Tssr27413	transcription start site region 27413	1179 bp downstream
Tssr27414	transcription start site region 27414	1197 bp downstream
Tssr27415	transcription start site region 27415	1213 bp downstream